Srinivasan Sivanandan
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experience

Senior Machine Learning Scientist
insitro
May 2019 - present
Lead Engineer
Samsung Research, India, Bangalore
June 2016 - August 2018
Intern
Informatics and Biocomputing
May 2015 - July 2015
Intern
CPPFD
May 2014 - July 2014
Intern
Department of Biotechnology
May 2013 - July 2013
Student Researcher
Computational Structural Biology Group
July 2014 - May 2016
Web Team Head
Kshitij 2014
July 2013 - April 2014
Web Team Head
Public Relations Cell
March 2013 - April 2014

publications

1. Srinivasan Sivanandan and Athi N. Naganathan. A disorder-induced domino-like destabilization mechanism governs the folding and functional dynamics of the repeat protein IκBα. PLoS Computational Biology, 9(12): e1003403, 12 2013
2. Nikhil S. Narayan, Srinivasan Sivanandan, Srinivas Kudavelly, Kedar A. Patwardhan, G. A. Ramaraju, "Automated detection and segmentation of follicles in 3D ultrasound for assisted reproduction," Proc. SPIE 10575, Medical Imaging 2018: Computer-Aided Diagnosis, 105751W (27 February 2018); (PDF full text)
3. Salcedo, A., Tarabichi, M., Espiritu, S.M.G., Deshwar, A.G., David, M., Wilson, N.M., Dentro, S., Wintersinger, J.A., Liu, L.Y., Ko, M. and Sivanandan, S., 2020. A community effort to create standards for evaluating tumor subclonal reconstruction. Nature biotechnology, 38(1), pp.97-107.
4. Rahul Suresh, Srinivasan Sivanandan, Nitin Singhal, JinYong Lee, Mi-Young Lee, Hye-Sung Won, "Automated measurement of fetal right-myocardial performance index from pulsed wave Doppler spectrum," Proc. SPIE 10950, Medical Imaging 2019: Computer-Aided Diagnosis, 109500L (13 March 2019); (PDF full text)
5. Ankita Agarwal, Srinivasan Sivanandan, Chandran Nithin, Sunandan Mukherjee, Ranjit P. Bahadur, "A machine learning approach towards sequence based prediction of RNA binding sites in proteins", The 43rd FEBS Congress : Biochemistry Forever, 2018 (Poster).

patents

1. Nikhil Narayan Subbarao, Srinivasan Sivanandan, Kedar Anil Patwardhan, Srinivas Rao Kudavelly, "Method and Apparatus for Follicular Quantification in 3D Ultrasound Images" - WO/2018/080120
2. Ravi Teja Narra, Srinivasan Sivanandan, Srinivas Rao Kudavelly, Nikhil Narayan Subbarao, Nitin Singhal, "Methods and Systems for Assessing Ovarian Parameters from Ultrasound Images" - WO/2019/078577

achievements

Institute Silver Medal (Department Topper) - 2016
Best Thesis Project Award - 2016
Mitacs Globalink Research Intern - 2015
University of Alberta Research Experience (UARE) - 2014
Kishore Vaigyanik Protsahan Yojana (KVPY) Scholar 2011
Cleared NSEC & Qualified for Indian National Chemistry Olympiad (INChO) - 2011

education

MScAC (2018 - 2019)
University of Toronto
Department of Computer Science


B.Tech + M.Tech
Indian Institute of Technology, Kharagpur
Major : Biotechnology and Biochemical Engineering
Minor : Chemical Engineering
Micro-specialization: Biomedical Devices and Instrumentation


Senior Secondary Education - Class XII
Maharishi Vidya Mandir, Sr. Sec. School
Physics, Chemistry, Mathematics, Computer Science and English


stash

Here are some of my open source contributions.
AutoMosaic
Software for Automated Reconstruction of torn paper documents/images
Developed as a part of OpenSoft Team 2014 - Meghnad Saha Hall of Residence
ResCite
Software for organized research paper search and citation analysis
Developed as a part of OpenSoft Team 2013 - Meghnad Saha Hall of Residence
Knowledge Coefficient
Web Application for Online Tests and Quizzing
eduCloud
Online School Management software
and many more on the line ...

contact

I live in South San Francisco, California
© Copyright 2018 - Srinivasan Sivanandan (@srinivasans), Photo Credits : Nikesh Aryan